Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA ExpressionKumar, Vinod; Westra, Harm-Jan; Karjalainen, Juha; Zhernakova, Daria V.; Esko, Tõnu; Hrdlickova, Barbara; Almeida, Rodrigo; Zhernakova, Alexandra; Reinmaa, Eva; Võsa, Urmo; Hofker, Marten H.; Fehrmann, Rudolf S. N.; Fu, Jingyuan; Withoff, Sebo; Metspalu, Andres; Franke, Lude; Wijmenga, Cisca; Cheung, Vivian G. · PLoS Genetics · 2013

Immunochip SNP array identifies novel genetic variants conferring susceptibility to candidaemiaKumar, Vinod; Cheng, Shih-Chin; Johnson, Melissa D.; Smeekens, Sanne P; Wojtowicz, Agnieszka; Giamarellos-Bourboulis, Evangelos; Karjalainen, Juha; Franke, Lude; Withoff, Sebo; Plantinga, Theo S; van de Veerdonk, Frank L.; van der Meer, Jos W.M.; Joosten, Leo A.B.; Sokol, Harry; Bauer, Hermann; Herrmann, Bernhard G.; Bochud, Pierre-Yves; Marchetti, Oscar; Perfect, John R.; Xavier, Ramnik J.; Kullberg, Bart Jan; Wijmenga, Cisca; Netea, Mihai G. · Nature Communications · 2014

Integration of multi-omics data and deep phenotyping enables prediction of cytokine responsesBakker, Olivier B.; Aguirre-Gamboa, Raul; Sanna, Serena; Oosting, Marije; Smeekens, Sanne P.; Jaeger, Martin; Zorro, Maria; Võsa, Urmo; Withoff, Sebo; Netea-Maier, Romana T.; Koenen, Hans J. P. M.; Joosten, Irma; Xavier, Ramnik J.; Franke, Lude; Joosten, Leo A. B.; Kumar, Vinod; Wijmenga, Cisca; Netea, Mihai G.; Li, Yang · Nature Immunology · 2018

A locus at 7p14.3 predisposes to refractory celiac disease progression from celiac diseaseHrdlickova, Barbara; Mulder, Chris J.; Malamut, Georgia; Meresse, Bertrand; Platteel, Mathieu; Kamatani, Yoichiro; Ricaño-Ponce, Isis; van Wanrooij, Roy L.J.; Zorro, Maria M.; Jan Bonder, Marc; Gutierrez-Achury, Javier; Cellier, Christophe; Zhernakova, Alexandra; Nijeboer, Petula; Galan, Pilar; Withoff, Sebo; Lathrop, Mark; Bouma, Gerd; Xavier, Ramnik J.; Jabri, Bana; Bensussan, Nadine C.; Wijmenga, Cisca; Kumar, Vinod · European Journal of Gastroenterology & Hepatology · 2018

A Functional Genomics Approach to Understand Variation in Cytokine Production in HumansLi, Yang; Oosting, Marije; Smeekens, Sanne P.; Jaeger, Martin; Aguirre-Gamboa, Raul; Le, Kieu T.T.; Deelen, Patrick; Ricaño-Ponce, Isis; Schoffelen, Teske; Jansen, Anne F.M.; Swertz, Morris A.; Withoff, Sebo; van de Vosse, Esther; van Deuren, Marcel; van de Veerdonk, Frank; Zhernakova, Alexandra; van der Meer, Jos W.M.; Xavier, Ramnik J.; Franke, Lude; Joosten, Leo A.B.; Wijmenga, Cisca; Kumar, Vinod; Netea, Mihai G. · Cell · 2016

A genome-wide functional genomics approach identifies susceptibility pathways to fungal bloodstream infection in humansJaeger, Martin; Matzaraki, Vasiliki; Aguirre-Gamboa, Raul; Gresnigt, Mark S; Chu, Xiaojing; Johnson, Melissa D; Oosting, Marije; Smeekens, Sanne P; Withoff, Sebo; Jonkers, Iris; Perfect, John R; van de Veerdonk, Frank L; Kullberg, Bart Jan; Joosten, Leo A B; Li, Yang; Wijmenga, Cisca; Netea, Mihai G; Kumar, Vinod · The Journal of Infectious Diseases · 2019

Differential Effects of Environmental and Genetic Factors on T and B Cell Immune TraitsAguirre-Gamboa, Raul; Joosten, Irma; Urbano, Paulo C.M.; van der Molen, Renate G.; van Rijssen, Esther; van Cranenbroek, Bram; Oosting, Marije; Smeekens, Sanne; Jaeger, Martin; Zorro, Maria; Withoff, Sebo; van Herwaarden, Antonius E.; Sweep, Fred C.G.J.; Netea, Romana T.; Swertz, Morris A.; Franke, Lude; Xavier, Ramnik J.; Joosten, Leo A.B.; Netea, Mihai G.; Wijmenga, Cisca; Kumar, Vinod; Li, Yang; Koenen, Hans J.P.M. · Cell Reports · 2016